ImmGen RNAseq Gene Skyline API

The API can retrieve an image for Gene Skyline and save it as a PNG (low and high resolution with alpha-channel) or as an SVG (vector graphics that can be modified through scripts or in an appropriate software) or as a PDF (Portable Document Format).

Call:

http://rstats.immgen.org/Skyline/api/get_image?gene=[gene_symbol]&data_group=[data_group]&population_group=[population_group]&populations=[populations]&scale=[scale_option]&format=[image_format]

Available parameters:

Examples:

- Retrieve Gene Skyline image for gene symbol Cd4 with the default parameters:

http://rstats.immgen.org/Skyline/api/get_image?gene=Cd4

Equals:

http://rstats.immgen.org/Skyline/api/get_image?gene=Cd4&data_group=ImmGen_ULI_RNAseq&population_group=Reference&scale=local&format=png

---

- Retrieve Gene Skyline image as a PDF for gene symbol Cd4 from Monocytes population group in ImmGen MNP OpenSource data group:

http://rstats.immgen.org/Skyline/api/get_image?gene=Cd4&data_group=ImmGen_MNP_OpenSource&population_group=Monocytes&format=pdf

---

- Retrieve Gene Skyline image for gene symbol Cd4 from some specific populations (see Appendix for details) in ImmGen ULI RNAseq data group:

http://rstats.immgen.org/Skyline/api/get_image?gene=Cd4&data_group=ImmGen_ULI_RNAseq&populations=B_Sp,T_4_Th,DC_4%2B_Sp,GN_Sp,Mo_6C%2BII-_Bl

The API method allows users to retrieve the normalized expression data for one gene symbol in CSV or JSON format.

Call:

http://rstats.immgen.org/Skyline/api/get_expr?gene=[gene_symbol]&data_group=[data_group]&population_group=[population_group]&populations=[populations]&format=[file_format]

Available parameters:

Examples:

- Retrieve expression values for gene symbol Cd4 with the default parameters:

http://rstats.immgen.org/Skyline/api/get_expr?gene=Cd4

Equals:

http://rstats.immgen.org/Skyline/api/get_expr?gene=Cd4&data_group=ImmGen_ULI_RNAseq&population_group=Reference&format=csv

---

- Retrieve expression values as a JSON file for gene symbol Cd4 from Monocytes population group in ImmGen MNP OpenSource data group:

http://rstats.immgen.org/Skyline/api/get_expr?gene=Cd4&data_group=ImmGen_MNP_OpenSource&population_group=Monocytes&format=json

---

- Retrieve expression values for gene symbol Cd4 from some specific populations (see Appendix for details) in ImmGen ULI RNAseq data group:

http://rstats.immgen.org/Skyline/api/get_expr?gene=Cd4&data_group=ImmGen_ULI_RNAseq&populations=B_Sp,T_4_Th,DC_4%2B_Sp,GN_Sp,Mo_6C%2BII-_Bl

All population names in ImmGen Gene Skyline Download the whole table

Please contact us if you have any questions regarding the API.